Dalsgaard, T. (Ed.), Nielsen, L. P., Brotas, V., Viaroli, P., Underwood, G., Nedwell, D., Sundback, K., Rysgaard, S., Miles, A., Bartoli, M., Dong, L., Thornton, D. C. O., Ottosen, L. D. M., Castaldelli, G., and Risgaard-Petersen, N.: Protocol Handbook for NICE – Nitrogen Cycling in Estuaries: A Project under the EU Research Programme: Marine Science and Technology (MAST III), National Environmental Research Institute, Silkeborg, Denmark, 2000.
De Brouwer, J. F. C., Bjelic, S., de Deckere, E. M. G. T., and Stal, L. J.: Interaction between biology and sedimentology in a mudflat (Biezelingse Ham Westerschelde the Netherlands), Cont. Shelf Res., 20, 1159–1178, 2000.
De Brouwer, J. F. C., Ruddy, G. K., Jones, T. E. R., and Stal, L. J.: Sorption of EPS to sediment particles and the effect on the rheology of sediment slurries, Biogeochemistry, 61, 57–71, 2002.
Decho, A. W.: Microbial biofilms in intertidal systems: an overview, Cont. Shelf Res., 20, 1257–1273, 2000.
DeVries, J. W.: Field Measurements of the erosion of cohesive sediments, J. Coast. Res., 8, 312–318, 1992.
Fagherazzi, S. and Mariotti, G.: Mudflat runnels: Evidence and importance of very shallow flows in intertidal morphodynamics, Geophys. Res. Lett., 39, L14402, https://doi.org/10.1029/2012GL052542, 2012.
Kim, J., Pitts, B., Stewart, P. S., Camper, A., and Yoon, J.: Comparison of the antimicrobial effects of chlorine, silver Ion, and tobramycin on biofilm, Antimicrob. Agents Ch., 52, 1446–1453, 2008.
Mariotti, G. and Fagherazzi, S.: Modeling the effect of tides and waves on benthic biofilms, J. Geophys. Res.-Biogeo., 117, G04010, https://doi.org/10.1002/jgrf.20134, 2012.
Mariotti, G. and Fagherazzi, S.: Wind waves on a mudflat: The influence of fetch and depth on bed shear stresses, Cont. Shelf Res., 60, S99–S110, https://doi.org/10.1016/j.csr.2012.03.001, 2013.
Mehta, A., Hayter, E., Parker, W., Krone, R., and Teeter, A.: Cohesive sediment transport. I: Process description, J. Hydraul. Eng., 115, 1076–1093, 1989.
Paterson, D. M.: The biogenic structure of early sediment fabric visualized by low-temperature scanning electron microscopy, J. Geol. Soc., 152, 131–140, 1995.
Paterson, D. M., Wiltshire, K. H., Miles, A., Blackburn, J., Davidson, I., Yates, M. G., McGrorty, S., and Eastwood, J. A.: Microbiological mediation of spectral reflectance from intertidal cohesive sediments, Limnol. Oceanogr., 43, 1207–1221, 1998.
Schreiber, U.: Pulse-Amplitude-Modulation (PAM) Fluorometry and Saturation Pulse Method: An Overview, in: Chlorophyll a Fluorescence, edited by: Papageorgiou, G. C. and Govindjee, P., Springer, the Netherlands, 279–319, 2004.
Stal, L. J.: Microphytobenthos as biogeomorphological force in intertidal sediment stabilization, Ecol. Eng., 36, 236–245, 2010.
Thompson, C. E. L., Amos, C. L., Jones, T. E. R., and Chaplin, J.: The manifestation of fluid-transmitted bed shear stress in a smooth annular flume-a comparison of methods, J. Coast. Res., 19, 1094–1103, 2003.
Tolhurst, T. J., Black, K. S., Shayler, S. A., Mather, S., Black, I., Baker, K., and Paterson, D. M.: Measuring the in situ shear stress of intertidal sediments with the Cohesive Strength Meter (CSM), Estuar. Coast. Shelf S., 49, 281–294, 1999.
Tolhurst, T. J., Jesus, B., Brotas, V., and Paterson, D. M.: Diatom migration and sediment armouring – an example from the Tagus Estuary, Portugal, Hydrobiologia, 503, 183–193, 2003.
van Leussen, W. and Winterwerp, J. C.: Laboratory experiments on sedimentation of fine-grained sediments: A state-of-the-art review in the light of Experiments with the Delft Tidal Flume, in: Residual Currents and Long-term Transport, edited by: Cheng, R. T., Springer, New York, USA, 241–259, 1990.
Winterwerp, J. C., Cornelisse, J. M., and Kuijper, C.: A laboratory study on the behavior of mud from the Western Scheldt under tidal conditions, in: Nearshore and Estuarine Cohesive Sediment Transport, edited by: Mehta, A. J., American Geophysical Union, Washington D.C., USA, 295–313, 1993.
Winterwerp, J. C., van Kesteren, W. G. M., van Prooijen, B., and Jacobs, W.: A conceptual framework for shear flow–induced erosion of soft cohesive sediment beds, J. Geophys. Res.-Oceans, 117, 2156–2202, https://doi.org/10.1029/2012JC008072, 2012.
Woodroffe, C. D.: Coasts: form, process and evolution, Cambridge University Press, Cambridge, United Kingdom, 2002.
Yallop, M. L., de Winder, B., Paterson, D. M., and Stal, L. J.: Comparative structure, primary production and biogenic stabilization of cohesive and non-cohesive marine sediments inhabited by microphytobenthos, Estuar. Coast. Shelf S., 39, 565–582., 1994.
